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THREE DIMENSIONAL STRUCTURE OF A HUMANIZED ANTI-IFN-GAMMA FAB (HuZAF) IN P21 21 21 SPACE GROUP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B4J PDB ENTRY 1B4J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 PEG6000, SODIUM CITRATE, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.7 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.39 α = 90 b = 74.274 β = 90 c = 104.643 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC BLUE OPTICS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 88.5 0.055 17.9 3 30615 -3 25.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 93 0.313 3.15 1518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1B4J 2 30 29067 1547 88.41 0.17433 0.17433 0.17177 0.1861 0.22227 RANDOM 27.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.68 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.813 r_scangle_it 3.84 r_scbond_it 2.317 r_mcangle_it 1.616 r_angle_refined_deg 1.504 r_mcbond_it 0.871 r_angle_other_deg 0.846 r_symmetry_vdw_other 0.326 r_nbd_other 0.259 r_nbd_refined 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.813 r_scangle_it 3.84 r_scbond_it 2.317 r_mcangle_it 1.616 r_angle_refined_deg 1.504 r_mcbond_it 0.871 r_angle_other_deg 0.846 r_symmetry_vdw_other 0.326 r_nbd_other 0.259 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.168 r_symmetry_hbond_refined 0.166 r_chiral_restr 0.093 r_nbtor_other 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3299 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing