X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6293PEG 6000, potassium phosphate, sodium phosphate , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0338.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.489α = 90
b = 79.054β = 90
c = 119.436γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2000-01-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.54LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.56596.10.040.07412.57.56558565481128
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.541.5689.30.4751.51.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.54126291759691319196.140.1770.152820.151190.18252RANDOM22.947
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.250.03-1.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.433
r_dihedral_angle_1_deg6.268
r_scangle_it3.705
r_angle_other_deg2.936
r_scbond_it2.558
r_angle_refined_deg1.86
r_mcangle_it1.587
r_mcbond_it0.987
r_nbtor_other0.578
r_symmetry_vdw_other0.238
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.433
r_dihedral_angle_1_deg6.268
r_scangle_it3.705
r_angle_other_deg2.936
r_scbond_it2.558
r_angle_refined_deg1.86
r_mcangle_it1.587
r_mcbond_it0.987
r_nbtor_other0.578
r_symmetry_vdw_other0.238
r_symmetry_vdw_refined0.223
r_nbd_refined0.219
r_chiral_restr0.213
r_nbd_other0.195
r_symmetry_hbond_refined0.173
r_xyhbond_nbd_refined0.159
r_bond_refined_d0.02
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3213
Nucleic Acid Atoms
Solvent Atoms623
Heterogen Atoms223

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing