X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5291zinc acetate, sodium cacodylate, PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.7354.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.4α = 90
b = 78.4β = 91.7
c = 67.8γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-10-25MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0440, 0.9794SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95098.40.05513.852348523482229.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9299.60.1725.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.9505234849688266098.390.182450.182450.180470.2189RANDOM29.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.36-0.33.43-2.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.908
r_scangle_it4.207
r_scbond_it2.502
r_mcangle_it1.478
r_angle_refined_deg1.434
r_angle_other_deg0.802
r_mcbond_it0.777
r_metal_ion_refined0.32
r_symmetry_vdw_refined0.271
r_nbd_other0.251
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.908
r_scangle_it4.207
r_scbond_it2.502
r_mcangle_it1.478
r_angle_refined_deg1.434
r_angle_other_deg0.802
r_mcbond_it0.777
r_metal_ion_refined0.32
r_symmetry_vdw_refined0.271
r_nbd_other0.251
r_symmetry_hbond_refined0.245
r_nbd_refined0.221
r_xyhbond_nbd_refined0.216
r_symmetry_vdw_other0.195
r_nbtor_other0.09
r_chiral_restr0.087
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4322
Nucleic Acid Atoms
Solvent Atoms266
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
SHELXDphasing
SHARPphasing
RESOLVEphasing