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Crystal structure of ProX from Archeoglobus fulgidus in complex with proline betaine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 zinc acetate, sodium cacodylate, PEG 4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.73 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.4 α = 90 b = 78.4 β = 91.7 c = 67.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-10-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0440, 0.9794 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.4 0.055 13.8 52348 52348 2 2 29.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.6 0.172 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 50 52348 49688 2660 98.39 0.18245 0.18245 0.18047 0.1941 0.2189 0.2282 RANDOM 29.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.36 -0.3 3.43 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.908 r_scangle_it 4.207 r_scbond_it 2.502 r_mcangle_it 1.478 r_angle_refined_deg 1.434 r_angle_other_deg 0.802 r_mcbond_it 0.777 r_metal_ion_refined 0.32 r_symmetry_vdw_refined 0.271 r_nbd_other 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.908 r_scangle_it 4.207 r_scbond_it 2.502 r_mcangle_it 1.478 r_angle_refined_deg 1.434 r_angle_other_deg 0.802 r_mcbond_it 0.777 r_metal_ion_refined 0.32 r_symmetry_vdw_refined 0.271 r_nbd_other 0.251 r_symmetry_hbond_refined 0.245 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.216 r_symmetry_vdw_other 0.195 r_nbtor_other 0.09 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4322 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SHELXD phasing SHARP phasing RESOLVE phasing