1SR0

Crystal structure of signalling protein from sheep(SPS-40) at 3.0A resolution using crystal grown in the presence of polysaccharides


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.829825mM tris-HCl,50mM NACl,19% ethanol, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.7755.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.793α = 90
b = 66.386β = 90
c = 107.896γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCHMIRROR2003-03-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5412

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1356800.1336.828.43205026721036.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.1780.5232.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1OWQ3.055672106857353800.17470.174030.172310.20547RANDOM28.118
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.07-1.321.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.457
r_scangle_it5.685
r_scbond_it3.385
r_dihedral_angle_1_deg3.114
r_mcangle_it2.668
r_angle_refined_deg2.426
r_angle_other_deg1.718
r_mcbond_it1.421
r_nbtor_other0.673
r_nbd_refined0.294
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.457
r_scangle_it5.685
r_scbond_it3.385
r_dihedral_angle_1_deg3.114
r_mcangle_it2.668
r_angle_refined_deg2.426
r_angle_other_deg1.718
r_mcbond_it1.421
r_nbtor_other0.673
r_nbd_refined0.294
r_nbd_other0.261
r_symmetry_vdw_other0.246
r_xyhbond_nbd_refined0.185
r_symmetry_vdw_refined0.171
r_chiral_restr0.164
r_xyhbond_nbd_other0.062
r_symmetry_hbond_refined0.037
r_bond_refined_d0.026
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2868
Nucleic Acid Atoms
Solvent Atoms78
Heterogen Atoms61

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing