NMR STRUCTURE OF D(GCATATGATAG)(DOT)D(CTATCATATGC): A CONSENSUS SEQUENCE FOR PROMOTERS RECOGNIZED BY SIGMA-K RNA POLYMERASE, 4 STRUCTURES
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | H2O AND D2O | 0.5 M | 7.0 | 1 ATMOSPHERE | 298 | ||
| 2 | COSY | H2O AND D2O | 0.5 M | 7.0 | 1 ATMOSPHERE | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AMX600 | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| MOLECULAR DYNAMIC (RMD) AND MONTE CARLO (RMC) CALCULATIONS | REFINEMENT DETAILS CAN BE FOUND IN THE BIOCHEMISTRY CITATION ABOVE. MODEL 1 : REFINED BY RMD FROM A-DNA MODEL 2 : REFINED BY RMD FROM B-DNA MODEL 3 : REFINED BY RMC FROM A-DNA MODEL 4 : REFINED BY RMC FROM B-DNA | MARDIGRAS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | CONVERGENCE, R FACTORS, ENERGIES |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 4 |
| Additional NMR Experimental Information | |
|---|---|
| Details | STRUCTURE DETERMINED WITH HOMONUCLEAR NMR METHODS. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | MARDIGRAS | PEARLMAN | |
| 2 | structure solution | MARDIGRAS | ||
| 3 | structure solution | Amber | ||
| 4 | structure solution | DNAminiCarlo | ||
