Experiment: 1SJP

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1KP8	1KP8.pdb

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.87	56.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.674	α = 90
b = 113.825	β = 94.585
c = 79.535	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2003-07-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.9184	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.2	50	99.5	0.1	20.2	4.99	17915	17489			88.7

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	3.2	3.31	97		0.415	2.6	3	1705

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1KP8.pdb	3.2	50	17205	16335	870	99.56	0.2436	0.24359	0.24142	0.2204	0.2849	0.2625	RANDOM	82.007

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.92		-1.73	-0.98		2.62

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	12.4
r_mcangle_it	9.475
r_scbond_it	8.755
r_mcbond_it	5.937
r_dihedral_angle_1_deg	3.017
r_angle_refined_deg	1.003
r_nbd_refined	0.261
r_symmetry_vdw_refined	0.258
r_xyhbond_nbd_refined	0.141
r_symmetry_hbond_refined	0.116

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	12.4
r_mcangle_it	9.475
r_scbond_it	8.755
r_mcbond_it	5.937
r_dihedral_angle_1_deg	3.017
r_angle_refined_deg	1.003
r_nbd_refined	0.261
r_symmetry_vdw_refined	0.258
r_xyhbond_nbd_refined	0.141
r_symmetry_hbond_refined	0.116
r_chiral_restr	0.057
r_bond_refined_d	0.008
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6595
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.