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KUMAMOLISIN-AS E78H MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other WILD-TYPE KUMAMOLISIN-AS APOENZYME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 PEG 8000, Ammonium Sulfate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.16 α = 114.82 b = 45.04 β = 106.36 c = 49.43 γ = 102.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC 2003-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 50 94.9 0.043 17 1.9 12280 12280 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.31 2.39 80.6 0.118 6.1 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIRECT REFINEMENT FREE R WILD-TYPE KUMAMOLISIN-AS APOENZYME 2.31 10 11509 11509 607 89.2 0.1619 0.1591 0.1592 0.2866 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2712
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.09 s_angle_d 0.03 s_non_zero_chiral_vol 0.026 s_zero_chiral_vol 0.019 s_from_restr_planes 0.0189 s_bond_d 0.008 s_anti_bump_dis_restr 0.008 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXL refinement SHELXL-97 refinement