Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
NMR Structure of the human C14orf129 gene product, HSPC210. Northeast Structural Genomics target HR969.
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_15N-separated_NOESY
1mM HSPC210, U-15N, 13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
95% H2O/5% D2O
100mM NaCl
6.5
ambient
298
2
3D_13C-separated_NOESY
1mM HSPC210, U-15N, 13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
95% H2O/5% D2O
100mM NaCl
6.5
ambient
298
3
HNHA
1mM HSPC210, U-15N, 13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
95% H2O/5% D2O
100mM NaCl
6.5
ambient
298
4
4D_13C-separated_NOESY
1mM HSPC210, U-15N, 13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
100% D2O
100mM NaCl
6.5
ambient
298
5
13C_HSQC
1mM HSPC210, U-15N, 5%-13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
95% H2O/5% D2O
100mM NaCl
6.5
ambient
298
6
H/D EXCHANGE
1mM HSPC210, U-15N, 13C; 20 mM MES, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02% NaN3
95% H2O/5% D2O
100mM NaCl
6.5
ambient
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Varian
INOVA
800
2
Varian
INOVA
750
3
Varian
UNITY
600
4
Varian
INOVA
600
NMR Refinement
Method
Details
Software
SIMULATED ANNEALING, TORSION ANGLE DYNAMICS
THE STRUCTURES ARE BASED ON A TOTAL OF 1132 RESTRAINTS. SUMMARY OF EXPERIMENTAL CONSTRAINTS: DISTANCE RESTRAINTS: TOTAL = 1000; INTRA-RESIDUE [I=J] = 23; SEQUENTIAL [(I-J)=1] = 239; MEDIUM RANGE [1<(I-J)<5] = 304; LONG RANGE [(I-J)>=5] = 382; HYDROGEN BOND RESTRAINTS = 52 (2 PER H-BOND); NUMBER OF DISTANCE RESTRAINTS PER RESIDUE = 9.7 (RESIDES 33-135); DIHEDRAL-ANGLE RESTRAINTS = 132 (66 PHI, 66 PSI); TOTAL NUMBER OF RESTRAINTS PER RESIDUE = 10.3 (RESIDES 33-135); NUMBER OF LONG RANGE RESTRA
NTS PER RESIDUE = 3.7; NUMBER OF STRUCTURES COMPUTED = 20; NUMBER OF STRUCTURES USED = 20. AVERAGE DISTANCE VIOLATIONS >0.1 ANG = 2.3; AVERAGE R.M.S. DISTANCE VIOLATION = 0.011 ANG; MAXIMUM NUMBER OF DISTANCE VIOLATIONS 4. AVERAGE DIHEDRAL ANGLE VIOLATIONS: >1 DEG = 1.5; MAX NUMBER OF DIHEDRAL ANGLE VIOLATIONS = 4; AVERAGE R.M.S. ANGLE VIOLATION = 0.17 DEG. RMSD VALUES: BACKBONE ATOMS (N,C,C',O, RESIDUES 33-135) = 0.67 ANG; ALL HEAVY ATOMS = 1.21 ANG; PROCHECK (RESDIUES 31-135): MOST FAVORED
EGIONS = 86%; ADDITIONAL ALLOWED REGIONS = 13%; GENEROUSLY ALLOWED REGIONS = 1%; DISALLOWED REGIONS = 0%.
THE UNSTRUCTURED 10 RESIDUE N-TERMINAL HIS TAG (MGHHHHHHSH) WAS NOT INCLUDED IN THE STRUCTURE CALCULATION.
Sparky
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
30
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
data analysis
Sparky
3.98
T.D. GODDARD, D.G. KNELLER
2
processing
Felix
98
MSI (ACCELRYS)
3
data analysis
AutoStructure
1.1.2
Y.J. HUANG, G.T. MONTELIONE
4
data analysis
TALOS
199.019.15.27
G. CORNILESCU, F. DELAGLIO, A. BAX
5
structure solution
X-PLOR
XPLOR-NIH-2.0.6
C.D. SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA, G.M. CLORE