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Pyrococcus furiosus galactokinase in complex with galactose, ADP and magnesium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other MAD phased model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 290 Ammonium sulphate, Tris-HCl, galactose, ADP, magnesium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 4.91 74.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.974 α = 90 b = 355.672 β = 90 c = 165.613 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2001-04-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97950, 0.97973, 0.93928 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 25 99.5 0.06 17.81 3.54 137024 70
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 2.97 0.38 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT MAD phased model 2.9 10 134320 127499 6821 99.95 0.23215 0.23215 0.23018 0.2583 0.26972 0.2888 RANDOM 64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.44 0.08 2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.063 r_scangle_it 2.376 r_scbond_it 1.708 r_angle_refined_deg 1.659 r_angle_other_deg 1.015 r_mcangle_it 0.745 r_mcbond_it 0.393 r_symmetry_vdw_refined 0.262 r_symmetry_vdw_other 0.239 r_nbd_other 0.231
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.063 r_scangle_it 2.376 r_scbond_it 1.708 r_angle_refined_deg 1.659 r_angle_other_deg 1.015 r_mcangle_it 0.745 r_mcbond_it 0.393 r_symmetry_vdw_refined 0.262 r_symmetry_vdw_other 0.239 r_nbd_other 0.231 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.107 r_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22351 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 360
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling MLPHARE phasing