☰ Navigation Tabs
Crystal Structure of the DEAD box protein Dhh1p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 MES, Potassium bromide, PEG400, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.29 45.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.21 α = 90 b = 80.41 β = 100.57 c = 54.824 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL40B2 0.9195, 0.9198, 0.9134 SPring-8 BL40B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.5 24039 23923 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.12 2.22 99.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 20 1 24039 22719 1204 99.52 0.20216 0.20049 0.2085 0.23356 0.2098 RANDOM 21.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.97 -0.08 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.476 r_scangle_it 2.78 r_scbond_it 1.581 r_mcangle_it 1.184 r_angle_refined_deg 1.085 r_angle_other_deg 0.763 r_mcbond_it 0.615 r_symmetry_vdw_other 0.245 r_nbd_other 0.228 r_nbd_refined 0.192
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.476 r_scangle_it 2.78 r_scbond_it 1.581 r_mcangle_it 1.184 r_angle_refined_deg 1.085 r_angle_other_deg 0.763 r_mcbond_it 0.615 r_symmetry_vdw_other 0.245 r_nbd_other 0.228 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.137 r_symmetry_vdw_refined 0.114 r_nbtor_other 0.078 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3008 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing