HIGH RESOLUTION SOLUTION STRUCTURE OF THE RETINOID X RECEPTOR DNA BINDING DOMAIN, NMR, 20 STRUCTURE
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | CBCA(CO)NH | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 2 | HBHA(CBCACO)NH | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 3 | CBCANH | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 4 | C(CO)NH-TOCSY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 5 | HCCH-COSY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 6 | HCCH-TOCSY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 7 | 13C-EDITED NOESY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 8 | 15N-EDITED NOESY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 9 | 15N-EDITED TOCSY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 10 | HNHA | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 11 | HNHB | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 12 | HACAHB-COSY | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 13 | 13C-13CO | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| 14 | 13C-15N SPIN ECHO DIFFERENCE CT-HSQC | WATER | 120 | 6.6 | AMBIENT | 300 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AMX | 500 |
| 2 | Bruker | DMX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| DISTANCE GEOMETRY AND RESTRAINED MOLECULAR DYNAMICS | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE | Amber |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST RESTRAINT VIOLATIONS AND AMBER ENERGIES |
| Conformers Calculated Total Number | 83 |
| Conformers Submitted Total Number | 20 |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED RXR-DBD |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN | |
| 2 | structure solution | SYBYL TRIAD | TRIAD | |
| 3 | structure solution | DIANA | ||
| 4 | structure solution | Amber | ||














