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simulated annealing combined with molecular dynamics in torsion angle space
The model of L7 dimer with the one unordered, extended hinge region and the second hinge region in helical conformation was calculated using the mean NMR structures of its N- and C-terminal domains
and NMR derived constraints obtained for U-15N protein L7,
as well as angle constraints for the helical hinge region, which are obtained from X-Ray structure of protein L12 from T.maritima (PDB code 1DD3).
VNMR
NMR Ensemble Information
Conformer Selection Criteria
structures with the least restraint violations,target function
Conformers Calculated Total Number
100
Conformers Submitted Total Number
1
Representative Model
1 (closest to the average)
Additional NMR Experimental Information
Details
The structure was modeled using NMR and X-Ray structure of protein L7/L12.