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Active Conformation of Farnesyl Pyrophosphate Synthase Bound to Isopentyl Pyrophosphate and Risedronate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Nanoliter Sitting Drop Vapour Diffusion 6.5 298 MPEG 2000, HEPES, pH 6.5, Nanoliter Sitting Drop Vapour Diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.68 54.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.8 α = 90 b = 88.8 β = 90 c = 174.988 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 97 CCD ADSC QUANTUM 4 2002-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.00 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.3 0.077 27.8 7.66 52067 51703 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 96.2 0.51 3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 20 49037 2635 99.33 0.20729 0.20558 0.23906 RANDOM 22.376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.44 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.095 r_scangle_it 3.072 r_scbond_it 1.823 r_angle_refined_deg 1.23 r_mcangle_it 1.042 r_angle_other_deg 0.826 r_mcbond_it 0.545 r_nbd_other 0.235 r_symmetry_hbond_refined 0.231 r_nbd_refined 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.095 r_scangle_it 3.072 r_scbond_it 1.823 r_angle_refined_deg 1.23 r_mcangle_it 1.042 r_angle_other_deg 0.826 r_mcbond_it 0.545 r_nbd_other 0.235 r_symmetry_hbond_refined 0.231 r_nbd_refined 0.207 r_symmetry_vdw_other 0.207 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.143 r_nbtor_other 0.084 r_chiral_restr 0.074 r_metal_ion_refined 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4504 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing