1R7F
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepatitis C virus (Ensemble of 43 structures. Sample in 100mM SDS)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v) | 6.0 | ambient | 313 | ||
2 | 2D TOCSY | 1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v) | 6.0 | ambient | 313 | ||
3 | DQF-COSY | 1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v) | 6.0 | ambient | 313 | ||
4 | 1H-13C HSQC | 1.2mM NS5A[1-31], 10mM DTTd10 | 100mM SDS in H2O/D2O 95/5 (v/v) | 6.0 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics, energy minimization | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 43 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | Varian |
2 | processing | VNMR | 6.1 | Varian |
3 | data analysis | VNMR | 6.1 | Varian |
4 | structure solution | X-PLOR | 3.85 | Brunger |
5 | refinement | X-PLOR | 3.85 | Brunger |