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Crystal structure of S. aureus methionine aminopeptidase in complex with a ketoheterocycle 618
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 294 PEG 3350, Bis-Tris, ammonium acetate, pH 5.5, microbatch, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.3 46.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.97 α = 90 b = 76.69 β = 104.5 c = 41.66 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH 2003-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.8 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.04 20 0.063 10.2 4.5 119267 116762 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.04 1.1 97.1 0.491 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.04 20 116762 112974 5957 99.81 0.14358 0.14248 0.1438 0.16512 0.1661 RANDOM 10.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.33 -0.32 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.861 r_dihedral_angle_1_deg 5.877 r_sphericity_free 4.729 r_scangle_it 4.393 r_sphericity_bonded 3.777 r_scbond_it 2.843 r_mcangle_it 2.238 r_angle_refined_deg 1.777 r_rigid_bond_restr 1.598 r_mcbond_it 1.505
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.861 r_dihedral_angle_1_deg 5.877 r_sphericity_free 4.729 r_scangle_it 4.393 r_sphericity_bonded 3.777 r_scbond_it 2.843 r_mcangle_it 2.238 r_angle_refined_deg 1.777 r_rigid_bond_restr 1.598 r_mcbond_it 1.505 r_angle_other_deg 0.786 r_nbd_refined 0.429 r_symmetry_vdw_refined 0.415 r_symmetry_hbond_refined 0.249 r_nbd_other 0.214 r_xyhbond_nbd_refined 0.195 r_symmetry_vdw_other 0.154 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1909 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement XDS data reduction CCP4 data scaling AMoRE phasing