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Homeobox protein VND (ventral nervous system defective protein)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 15N-1H HSQC 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N SINGLE-LABELED; 90% H2O, 10% D2O; PH 6.8 6.8 AMBIENT 308 2 3D CBCANH 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N/13C DOUBLE-LABELED; 90% H2O, 10% D2O; PH 6.8 6.8 AMBIENT 308 3 3D CBCA(CO)NH 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N/13C DOUBLE-LABELED; 90% H2O, 10% D2O; PH 6.8 6.8 AMBIENT 308 4 3D HBHA(CO)NH 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N/13C DOUBLE-LABELED; 90% H2O, 10% D2O; PH 6.8 6.8 AMBIENT 308 5 3D HNHA 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N/13C DOUBLE-LABELED; 90% H2O, 10% D2O; PH 6.8 6.8 AMBIENT 308 6 3D HCCH-TOCSY 0.7 MM A35T VND/NK2-DNA COMPLEX; A35T VND/NK2 IS 15N/13C DOUBLE-LABELED; 100% D2O; PH6.8 6.8 AMBIENT 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AMX 600
NMR Refinement Method Details Software simulated annealing THE STRUCTURES ARE BASED ON 1146 NOE-DERIVED DISTANCE RESTRAINTS AND 43 DIHEDRAL ANGLE RESTRAINTS. NMRPipe
NMR Ensemble Information Conformer Selection Criteria STRUCTURES WITH ACCEPTABLE COVALENT GEOMETRY,STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details 3D 15N EDITED NOESY-HSQC, 4D 15N/13C EDITED HMQC-NOESY-HSQC, AND 4D 13C/13C EDITED HMQC-NOESY-HSQC WERE USED FOR OBTAINING NOE RESTRAINTS.
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe DELAGLIO 2 structure solution X-PLOR BRUNGER 3 refinement X-PLOR BRUNGER