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cytochrome cH from Methylobacterium extorquens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 HANGING DROP VAPOUR DIFFUSION, 10 MG/ML PROTEIN, 18% PEG 1500, 50 MM TRIS-HCL, PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.79 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.76 α = 67.81 b = 57.57 β = 89.33 c = 50.95 γ = 74.4
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 1997-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF NONIUS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 94.4 0.061 16.3 2.25 16999
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.07 71.5 0.134 6.3 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2C2C 2.01 30 16999 94.4 0.161 0.4839 0.222 0.4834 RANDOM 31.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_singtor_nbd 0.028 p_angle_d 0.018 p_chiral_restr 0.011 p_planar_d 0.009 p_bond_d 0.007 p_plane_restr 0.007 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it
RMS Deviations Key Refinement Restraint Deviation p_singtor_nbd 0.028 p_angle_d 0.018 p_chiral_restr 0.011 p_planar_d 0.009 p_bond_d 0.007 p_plane_restr 0.007 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2148 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 129
Software Software Software Name Purpose CCP4 refinement MOSFLM data reduction Agrovata data scaling SCALA data scaling CCP4 phasing