1QJS

mammalian blood serum haemopexin glycosylated-native protein and in complex with its ligand haem


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.9277HANGING DROP, 4 DEGREES CENTIGRADE. RESEVOIR SOLUTION: 15-22% PEG 6000, 0.1-0.2 M TRIS HCL PH 7.9, 0.05-0.1 M EDTA, 0.05-0.2 NACL, PROTEIN COMPLEX SOLUTION: 65 MG/ML IN 0.01 M TRIS PH 7.9, 0.01 M NACL, 0.1 M EDTA
Crystal Properties
Matthews coefficientSolvent content
2.0440

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.9α = 90
b = 69.9β = 108.16
c = 151.81γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU IMAGE PLATECOLLIMATOR1997-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.92097.50.0646.22.22091544
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0587.50.2512.22

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRTHROUGHOUT1HXN AND 1FBL2.9202.52091510197.50.2510.2550.312RANDOM39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.5
p_staggered_tor23.5
p_planar_tor15.1
p_multtor_nbd0.235
p_singtor_nbd0.193
p_angle_d0.041
p_bond_d0.013
p_angle_deg
p_planar_d
p_hb_or_metal_coord
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.5
p_staggered_tor23.5
p_planar_tor15.1
p_multtor_nbd0.235
p_singtor_nbd0.193
p_angle_d0.041
p_bond_d0.013
p_angle_deg
p_planar_d
p_hb_or_metal_coord
p_mcbond_it
p_mcangle_it
p_scbond_it
p_scangle_it
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6578
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms108

Software

Software
Software NamePurpose
DENZOdata reduction
Agrovatadata scaling
ROTAVATAdata scaling
AMoREphasing
MAMAphasing
REFMACrefinement