☰ Navigation Tabs
Epothilone B-bound Cytochrome P450epoK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other polyalanine model of P450eryF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.4 296 PEG 500 MME, Glycine, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 23K
Crystal Properties Matthews coefficient Solvent content 2.46 50.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.43 α = 90 b = 60.43 β = 90 c = 252.84 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Double-crystal Si(111) 2002-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.1 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 91 34134 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.93 1.95 72.4 0.378 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Imidazole-bound cytochrome P450epoK 1.93 50 32436 1696 93.88 0.21962 0.21754 0.2172 0.26002 RANDOM 38.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 1.23 -2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.491 r_mcangle_it 2.021 r_scangle_it 1.92 r_angle_refined_deg 1.291 r_scbond_it 1.204 r_mcbond_it 1.163 r_symmetry_hbond_refined 0.254 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.217 r_symmetry_vdw_refined 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.491 r_mcangle_it 2.021 r_scangle_it 1.92 r_angle_refined_deg 1.291 r_scbond_it 1.204 r_mcbond_it 1.163 r_symmetry_hbond_refined 0.254 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.217 r_symmetry_vdw_refined 0.177 r_chiral_restr 0.097 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3159 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing