1Q42

Crystal structure analysis of the Candida albicans Mtr2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17293NaH2PO4/K2HPO4, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.7554.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.489α = 90
b = 54.308β = 99.02
c = 61.285γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.752594.80.0564.72.319385
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8840.361.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Q401.75121834399494.370.225180.223550.25434RANDOM22.442
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.691.47-0.47-0.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.369
r_scangle_it3.272
r_scbond_it1.962
r_mcangle_it1.708
r_angle_refined_deg1.267
r_mcbond_it0.907
r_angle_other_deg0.77
r_nbd_other0.225
r_nbd_refined0.198
r_symmetry_vdw_other0.174
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.369
r_scangle_it3.272
r_scbond_it1.962
r_mcangle_it1.708
r_angle_refined_deg1.267
r_mcbond_it0.907
r_angle_other_deg0.77
r_nbd_other0.225
r_nbd_refined0.198
r_symmetry_vdw_other0.174
r_symmetry_vdw_refined0.106
r_chiral_restr0.086
r_nbtor_other0.082
r_xyhbond_nbd_refined0.082
r_symmetry_hbond_refined0.038
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1271
Nucleic Acid Atoms
Solvent Atoms71
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement
CCP4data scaling