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Modulation of agrin function by alternative splicing and Ca2+ binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 276 peg 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 1.94 36.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.329 α = 90 b = 57.54 β = 127.1 c = 74.621 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 0.97834 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 24.4 98.7 0.043 8.2 4.3 63594
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.421 20 60179 3213 100 0.22116 0.2201 0.24017 RANDOM 11.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.05 0.19 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.153 r_dihedral_angle_1_deg 5.036 r_scangle_it 1.871 r_angle_refined_deg 1.326 r_scbond_it 1.133 r_mcangle_it 0.82 r_angle_other_deg 0.672 r_mcbond_it 0.433 r_symmetry_vdw_refined 0.261 r_symmetry_vdw_other 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.153 r_dihedral_angle_1_deg 5.036 r_scangle_it 1.871 r_angle_refined_deg 1.326 r_scbond_it 1.133 r_mcangle_it 0.82 r_angle_other_deg 0.672 r_mcbond_it 0.433 r_symmetry_vdw_refined 0.261 r_symmetry_vdw_other 0.235 r_nbd_refined 0.233 r_nbd_other 0.231 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.145 r_xyhbond_nbd_other 0.084 r_metal_ion_refined 0.077 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2888 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing