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Crystal Structure of Epothilone D-bound Cytochrome P450epoK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.4 296 PEG 550, Glycine, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 23K
Crystal Properties Matthews coefficient Solvent content 2.46 50.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.43 α = 90 b = 60.43 β = 90 c = 252.77 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2002-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.1 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 96.2 0.063 33.9 25935 35.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.154 96.2 0.342 3.7 1348
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 50 25935 25935 1329 95.48 0.22 0.22 0.219 0.2257 0.275 RANDOM 47.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 1.24 -2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.318 r_mcangle_it 2.538 r_scangle_it 2.382 r_scbond_it 1.611 r_angle_refined_deg 1.44 r_mcbond_it 1.438 r_angle_other_deg 0.819 r_symmetry_hbond_refined 0.397 r_symmetry_vdw_refined 0.338 r_symmetry_vdw_other 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.318 r_mcangle_it 2.538 r_scangle_it 2.382 r_scbond_it 1.611 r_angle_refined_deg 1.44 r_mcbond_it 1.438 r_angle_other_deg 0.819 r_symmetry_hbond_refined 0.397 r_symmetry_vdw_refined 0.338 r_symmetry_vdw_other 0.313 r_nbd_other 0.273 r_xyhbond_nbd_refined 0.252 r_nbd_refined 0.234 r_nbtor_other 0.092 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3175 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 77
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction