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Solution structure of the UBA domain in Saccharomyces cerevisiae protein, Swa2p
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1mM UBA domain; 50mM phosphate buffer 90% H2O/10% D2O 50mM phosphate buffer 6.0 ambient 303 2 2D TOCSY 1mM UBA domain; 50mM phosphate buffer 90% H2O/10% D2O 50mM phosphate buffer 6.0 ambient 303 3 DQF-COSY 1mM UBA domain; 50mM phosphate buffer 90% H2O/10% D2O 50mM phosphate buffer 6.0 ambient 303 4 2D NOESY 1mM UBA domain; 50mM phosphate buffer 100% D2O 50mM phosphate buffer 6.0 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software molecular dynamics 373 NOE-derived distance constraints, 34 residual dipolar couplings XwinNMR
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6 Bruker 2 structure solution CYANA 1.0.6 Guentert, P., Mumenthaler, C. & Wuethrich, K. 3 refinement Amber 7 Case D.A., Pearlman D.A., Caldwell, J.W,. Cheatham T.E., Wang J., Ross W.S., Simmerling C., Darden T., Merz K.M., Stanton R.V., Cheng A., Vincent J.J., Crowley M., Tsui V., Gohlke H., Radmer R., Duan Y., Pitera J., Massova I., Seibel G.L., Singh U.C., Weiner P., Kollman P.A. 4 data analysis XEASY 1.3.x Ch. Bartels, T.-H. Xia, M. Billeter, P. Guentert and K. Wuethrich 5 data analysis Felix 2000 Accelrys