1PFJ
Solution structure of the N-terminal PH/PTB domain of the TFIIH P62 subunit
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.5mM P62; 20mM deuterated TRIS; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM | 7.4 | ambient | 293 | |
2 | 3D_13C-separated_NOESY | 1.5mM P62 U-15N,13C; 20mM deuterated TRIS; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM | 7.4 | ambient | 293 | |
3 | 3D_15N-separated_NOESY | 1.2mM P62 U-15N; 20mM deuterated TRIS; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM | 7.4 | ambient | 293 | |
4 | HNHA | 1.2mM P62 U-15N; 20mM deuterated TRIS; 90% H2O, 10% D2O | 90% H2O/10% D2O | 20mM | 7.4 | ambient | 293 | |
5 | IPAP-[1H-15N] HSQC | 0.9mM P62 U-15N; 20mM deuterated TRIS + 26ug C12E6/hexanol; 90% H2O, 10% D2O | 90% H2O, 10% D2O; 26 ug C12E6/hexanol | 20mM | 7.4 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | total NOE restraints: 1944 dihedral angle restraints: 148 hydrogen bonds: 35 Residual Dipolar coupling: 76 | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 19 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | NIH | Brunger |
2 | structure solution | CNS | 1.0 | Brunger |