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Crystal Structure of Vibrio cholerae putative NTPase EpsE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 287 PEG 200, 3-morpholinopropanesulfonate, AMP-PNP, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.79 55.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.412 α = 90 b = 104.412 β = 90 c = 166.918 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU: Double crystal: Si(111) 2002-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9791 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 60 100 0.152 11.1 10.4 15414
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.75 100 0.577 3.8 10.6 750
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.7 60 15414 13973 746 90.65 0.2404 0.23811 0.2298 0.28422 0.2784 RANDOM 39.426
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.59 0.79 1.59 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_scangle_it 4.52 r_scbond_it 2.819 r_mcangle_it 2.208 r_angle_refined_deg 1.348 r_mcbond_it 1.091 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.208 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.201 r_scangle_it 4.52 r_scbond_it 2.819 r_mcangle_it 2.208 r_angle_refined_deg 1.348 r_mcbond_it 1.091 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.208 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2977 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction ELVES data reduction CCP4 data scaling SOLVE phasing