1OXX

Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.3291PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.1141.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.282α = 90
b = 48.427β = 90
c = 183.533γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-09-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4533.5800.07514.3624796247911
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.531.20.3732

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.4533.521575165751631001000.174490.172390.21297RANDOM10.859
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-0.030.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.231
r_scangle_it8.584
r_scbond_it6.097
r_dihedral_angle_1_deg4.425
r_mcangle_it3.777
r_mcbond_it2.481
r_angle_other_deg1.587
r_angle_refined_deg1.37
r_symmetry_hbond_refined0.505
r_xyhbond_nbd_refined0.325
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg16.231
r_scangle_it8.584
r_scbond_it6.097
r_dihedral_angle_1_deg4.425
r_mcangle_it3.777
r_mcbond_it2.481
r_angle_other_deg1.587
r_angle_refined_deg1.37
r_symmetry_hbond_refined0.505
r_xyhbond_nbd_refined0.325
r_nbd_refined0.244
r_nbd_other0.223
r_xyhbond_nbd_other0.222
r_symmetry_vdw_other0.211
r_symmetry_vdw_refined0.16
r_nbtor_other0.112
r_chiral_restr0.104
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_bond_other_d
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2707
Nucleic Acid Atoms
Solvent Atoms694
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing