Solution structure of the first type III module of human fibronectin determined by 1H, 15N NMR spectroscopy
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 1-2 mM [U-15N] protein | 90% H2O/10% D2O | unbuffered | 6 | ambient | 313 | |
| 2 | 3D_15N-separated_TOCSY | 1-2 mM [U-15N] protein | 90% H2O/10% D2O | unbuffered | 6 | ambient | 313 | |
| 3 | HNHA | 1-2 mM [U-15N] protein | 90% H2O/10% D2O | unbuffered | 6 | ambient | 313 | |
| 4 | 2D NOESY | 1-2 mM [U-15N] protein | 90% H2O/10% D2O | unbuffered | 6 | ambient | 313 | |
| 5 | 2D TOCSY | 1-2 mM [U-15N] protein | 90% H2O/10% D2O | unbuffered | 6 | ambient | 313 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Oxford | OMEGA | 750 |
| 2 | Oxford | OMEGA | 600 |
| 3 | Oxford | OMEGA | 500 |
| 4 | Bruker | DMX | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | Structures refined by molecular dynamics using residual dipolar couplings. Structures based on a total of 1113 distance restraints, 81 dihedral angle restraints and 57 residual dipolar couplings. | X-PLOR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 24 |
| Conformers Submitted Total Number | 24 |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | Felix | 2.3 | Molecular Simulations Inc. |
| 2 | processing | XwinNMR | 2.6 | Bruker |
| 3 | data analysis | XEASY | 1.3 | Xia and Bartels |
| 4 | structure calculation | DYANA | 1.5 | Guentert |
| 5 | refinement | X-PLOR | 3.8 | Brunger |














