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Paxillin LD4 motif bound to the Focal Adhesion Targeting (FAT) domain of the Focal Adhesion Kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K05 PDB ENTRY 1K05
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 292 sodium chloride, glycerol, Hepes, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.9 74.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.308 α = 90 b = 223.274 β = 90 c = 96.992 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.98 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 41.6 97.3 0.098 0.081 7.2 3 39088 39088 50.49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.48 99.1 0.906 0.749 1 2.9 5762
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1K05 2.35 37.27 39088 39088 1980 96.85 0.2432 0.24326 0.24161 0.2436 0.27357 RANDOM 54.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.69 -5.3 -2.38
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.641 r_dihedral_angle_1_deg 5.309 r_scbond_it 3.957 r_mcangle_it 3.157 r_angle_refined_deg 2.211 r_mcbond_it 1.721 r_angle_other_deg 1.006 r_symmetry_vdw_other 0.267 r_nbd_other 0.249 r_nbd_refined 0.243
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.641 r_dihedral_angle_1_deg 5.309 r_scbond_it 3.957 r_mcangle_it 3.157 r_angle_refined_deg 2.211 r_mcbond_it 1.721 r_angle_other_deg 1.006 r_symmetry_vdw_other 0.267 r_nbd_other 0.249 r_nbd_refined 0.243 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.189 r_symmetry_vdw_refined 0.176 r_chiral_restr 0.113 r_nbtor_other 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3369 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling