1OQ0
P6.1 stem loop from the activation domain of hTR
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.8 mM RNA, 10 mM Sodium Phosphate | D20 | 10 mM Na | 6 | 300 | ||
2 | 2D TOCSY | 0.8 mM RNA, 10 mM Sodium Phosphate | D20 | 10 mM Na | 6 | 300 | ||
3 | 3D_13C-separated_NOESY | 0.8 mM RNA, 10 mM Sodium Phosphate | D20 | 10 mM Na | 6 | 300 | ||
4 | DQF-COSY | 0.8 mM RNA, 10 mM Sodium Phosphate | D20 | 10 mM Na | 6 | 300 | ||
5 | HCCH-COSY | 0.8 mM RNA, 10 mM Sodium Phosphate | D20 | 10 mM Na | 6 | 300 | ||
6 | 2D NOESY | 0.8 mM RNA, 10 mM Sodium Phosphate | 95% H20, 5% D20 | 10 mM Na | 6 | 277 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DMX | 750 |
3 | Bruker | DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Torsion angle molecular dynamics with simulated anealing in CNS version 5 | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 5 | |
2 | collection | XwinNMR | 3.X | |
3 | processing | NMRPipe | ||
4 | data analysis | Sparky | 3.91 | |
5 | refinement | CNS | 5 |