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Complex of Drosophila odorant binding protein LUSH with butanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OOF PDB ENTRY 1OOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 277 PEG 4000, sodium acetate, n-butanol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.12 42.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.938 α = 90 b = 46.938 β = 90 c = 111.328 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD SBC-1 Mirrors 2002-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97895 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 30 96.7 0.043 21.8 3.1 66271 64084 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.29 89.4 0.172 2.8 2 5918
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OOF 1.25 30 59607 56323 6344 94.49 0.16294 0.16294 0.16044 0.18501 RANDOM 11.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.593 r_dihedral_angle_1_deg 3.543 r_scangle_it 3.097 r_sphericity_free 1.973 r_scbond_it 1.92 r_sphericity_bonded 1.554 r_mcangle_it 1.344 r_angle_refined_deg 1.315 r_rigid_bond_restr 0.947 r_mcbond_it 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.593 r_dihedral_angle_1_deg 3.543 r_scangle_it 3.097 r_sphericity_free 1.973 r_scbond_it 1.92 r_sphericity_bonded 1.554 r_mcangle_it 1.344 r_angle_refined_deg 1.315 r_rigid_bond_restr 0.947 r_mcbond_it 0.77 r_angle_other_deg 0.743 r_nbd_refined 0.241 r_symmetry_vdw_other 0.22 r_symmetry_hbond_refined 0.214 r_nbd_other 0.208 r_xyhbond_nbd_refined 0.137 r_symmetry_vdw_refined 0.132 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2081 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing