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Complex of Drosophila odorant binding protein LUSH with propanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OOF PDB ENTRY 1OOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 277 PEG 4000, sodium acetate, n-propanol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.98 α = 90 b = 46.98 β = 90 c = 111.457 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD SBC-1 Mirrors 2002-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97857 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 98.7 0.041 27.1 4.1 42743 42187 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 98.9 0.22 3.2 3.4 4216
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OOF 1.45 30 38346 37127 4194 96.83 0.17645 0.17645 0.17413 0.19743 RANDOM 14.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.981 r_scangle_it 4.668 r_dihedral_angle_1_deg 3.752 r_scbond_it 2.799 r_mcangle_it 1.753 r_angle_refined_deg 1.679 r_mcbond_it 0.989 r_angle_other_deg 0.831 r_nbd_refined 0.237 r_symmetry_vdw_other 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.981 r_scangle_it 4.668 r_dihedral_angle_1_deg 3.752 r_scbond_it 2.799 r_mcangle_it 1.753 r_angle_refined_deg 1.679 r_mcbond_it 0.989 r_angle_other_deg 0.831 r_nbd_refined 0.237 r_symmetry_vdw_other 0.222 r_nbd_other 0.194 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.14 r_symmetry_vdw_refined 0.114 r_chiral_restr 0.101 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2025 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing