1OKR

Three-dimensional structure of S.aureus methicillin-resistance regulating transcriptional repressor MecI.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.427720 MM TRIS-HCL PH 7.4, 0.2 M NACL AT 4 DEGREES.
Crystal Properties
Matthews coefficientSolvent content
3.160

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.05α = 90
b = 73.36β = 90
c = 74.68γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.97625,0.97915,0.97926, 0.96111ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.466.196.60.0615.64.361498
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5384.70.5061.42.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.4501336375395.90.2220.2180.298RANDOM30.79
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.79-0.88-3.91
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.527
r_dihedral_angle_1_deg7.198
r_scbond_it6.017
r_mcangle_it4.122
r_mcbond_it2.499
r_angle_refined_deg1.561
r_angle_other_deg0.88
r_symmetry_vdw_other0.334
r_nbd_other0.23
r_nbd_refined0.219
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.527
r_dihedral_angle_1_deg7.198
r_scbond_it6.017
r_mcangle_it4.122
r_mcbond_it2.499
r_angle_refined_deg1.561
r_angle_other_deg0.88
r_symmetry_vdw_other0.334
r_nbd_other0.23
r_nbd_refined0.219
r_xyhbond_nbd_refined0.168
r_chiral_restr0.114
r_symmetry_hbond_refined0.101
r_symmetry_vdw_refined0.097
r_nbtor_other0.09
r_bond_refined_d0.018
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2051
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms13

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SnBphasing
SOLVEphasing
REFMACrefinement