X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.52M NA/K PHOSPHATE PH 5.5
Crystal Properties
Matthews coefficientSolvent content
3.0960.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.125α = 90
b = 148.125β = 90
c = 148.125γ = 90
Symmetry
Space GroupI 41 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287WEISENBERG1991-03-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORYPhoton Factory

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2100950.0749.4126666

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.4105.411037451897.50.1940.1920.242RANDOM42.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.618
r_scangle_it4.472
r_scbond_it2.468
r_mcangle_it2.367
r_angle_refined_deg1.491
r_mcbond_it1.252
r_angle_other_deg0.851
r_symmetry_hbond_refined0.283
r_symmetry_vdw_other0.247
r_nbd_other0.228
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.618
r_scangle_it4.472
r_scbond_it2.468
r_mcangle_it2.367
r_angle_refined_deg1.491
r_mcbond_it1.252
r_angle_other_deg0.851
r_symmetry_hbond_refined0.283
r_symmetry_vdw_other0.247
r_nbd_other0.228
r_nbd_refined0.212
r_xyhbond_nbd_refined0.177
r_symmetry_vdw_refined0.169
r_chiral_restr0.097
r_nbtor_other0.088
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1437
Nucleic Acid Atoms
Solvent Atoms92
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
WEISdata reduction
SCALAdata scaling
MLPHAREphasing