1ODH

Structure of the GCM domain bound to DNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16pH 6.00
Crystal Properties
Matthew coefficientSolvent content
2.3948.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.81α = 90
b = 52.91β = 103.24
c = 62.97γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH1999-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.853097.90.049242.918243133.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.852.9595.60.28142.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.8519.35623051697.80.2190.2190.281RANDOM55.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-18.296.823.39-5.1
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d21.8
c_scangle_it2.76
c_mcangle_it2.35
c_scbond_it1.67
c_mcbond_it1.31
c_angle_deg1.3
c_improper_angle_d1.03
c_bond_d0.008
c_angle_deg_prot
c_bond_d_na
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d21.8
c_scangle_it2.76
c_mcangle_it2.35
c_scbond_it1.67
c_mcbond_it1.31
c_angle_deg1.3
c_improper_angle_d1.03
c_bond_d0.008
c_angle_deg_prot
c_bond_d_na
c_angle_d
c_dihedral_angle_d_prot
c_angle_d_na
c_improper_angle_d_na
c_improper_angle_d_prot
c_angle_d_prot
c_bond_d_prot
c_angle_deg_na
c_dihedral_angle_d_na
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1277
Nucleic Acid Atoms527
Solvent Atoms4
Heterogen Atoms2

Software

Software
Software NamePurpose
CNSrefinement
HKLdata reduction
SCALEPACKdata scaling
SOLVEphasing