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THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8A PDB ENTRY 1E8A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 5-7% PEG 5K MME, 250MM NACL, 5MM CACL2,1MM CUCL2,0.1M NA-CACODYLATE PH 6.5; HANGING-DROP VAPOUR DIFFUSION + SEEDING
Crystal Properties Matthews coefficient Solvent content 3 58.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.569 α = 90 b = 118.957 β = 90 c = 90.185 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2002-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 25 99.7 0.073 18.1 5.4 39556
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.27 97.6 0.36 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E8A 2.19 25 37532 1983 99.5 0.188 0.186 0.2064 0.226 RANDOM 19.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.38 3.25 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.636 r_scangle_it 2.828 r_scbond_it 1.72 r_angle_refined_deg 1.353 r_angle_other_deg 0.999 r_mcangle_it 0.959 r_mcbond_it 0.513 r_nbd_other 0.231 r_nbd_refined 0.229 r_symmetry_hbond_refined 0.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.636 r_scangle_it 2.828 r_scbond_it 1.72 r_angle_refined_deg 1.353 r_angle_other_deg 0.999 r_mcangle_it 0.959 r_mcbond_it 0.513 r_nbd_other 0.231 r_nbd_refined 0.229 r_symmetry_hbond_refined 0.215 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_other 0.182 r_symmetry_vdw_refined 0.124 r_metal_ion_refined 0.108 r_nbtor_other 0.093 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4192 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing