Solution Structure of the Prp40 WW Domain Pair of the Yeast Splicing Factor Prp40
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 13C-NOESY | 1.5 MM 15N- OR 13C,15N | 20MM NA PHOSPHATE, 30MM NACL | 6.3 | 1 atm | 295 | ||
| 2 | 15N-NOESY | 1.5 MM 15N- OR 13C,15N | 20MM NA PHOSPHATE, 30MM NACL | 6.3 | 1 atm | 295 | ||
| 3 | S3CT | 1.5 MM 15N- OR 13C,15N | 20MM NA PHOSPHATE, 30MM NACL | 6.3 | 1 atm | 295 | ||
| 4 | HNCG | 1.5 MM 15N- OR 13C,15N | 20MM NA PHOSPHATE, 30MM NACL | 6.3 | 1 atm | 295 | ||
| 5 | HNHA-J | 1.5 MM 15N- OR 13C,15N | 20MM NA PHOSPHATE, 30MM NACL | 6.3 | 1 atm | 295 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 500 |
| 2 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| AMBIGUOUS DISTANCE RESTRAINTS SIMULATED ANNEALING WIT TORSION ANGLE DYNAMICS AS IMPLEMENTED IN ARIA1.0 | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. | ARIA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | STRUCTURES WITH ACCEPTABLE COVALEN GEOMETRY, STRUCTURES WITH FAVORABL NON-BOND ENERGY |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 7 |
| Representative Model | 1 (n/a) |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE STRUCTURE WAS DETERMINED USING STANDARD TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C,15N-LABELED PRP40 1-75. RESIDUAL DIPOLAR COUPLINGS WERE MEASURED TO INCREASE THE CONVERGENCE OF THE SET OF STUCTURES CALCULATED. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | ARIA | NILGES, M. | |
| 2 | structure solution | XEASY | ||
| 3 | structure solution | NMRView | ||
| 4 | structure solution | PIPP/ CAPP | CAPP | |
| 5 | structure solution | ARIA | ||
| 6 | structure solution | CNS | ||
