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Crystal structure of Transcriptional regulator (TM1171) from Thermotoga maritima at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 9.5 277 10% PEG-3000, 0.1M CHES pH 9.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.01 58.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.971 α = 90 b = 62.971 β = 90 c = 167.103 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 100 0.112 22.26 5.82 12634 12634 53.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 98.17 0.912 1.53 5.04 1231
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 38.97 8737 443 97.99 0.19743 0.19483 0.201 0.25324 0.2572 RANDOM 47.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.04 1.02 2.04 -3.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_4_deg 19.652 r_dihedral_angle_3_deg 14.405 r_dihedral_angle_1_deg 6.467 r_scangle_it 2.585 r_scbond_it 1.807 r_angle_refined_deg 1.419 r_mcangle_it 1.137 r_mcbond_it 0.797 r_angle_other_deg 0.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.407 r_dihedral_angle_4_deg 19.652 r_dihedral_angle_3_deg 14.405 r_dihedral_angle_1_deg 6.467 r_scangle_it 2.585 r_scbond_it 1.807 r_angle_refined_deg 1.419 r_mcangle_it 1.137 r_mcbond_it 0.797 r_angle_other_deg 0.782 r_symmetry_vdw_other 0.306 r_xyhbond_nbd_refined 0.22 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.215 r_symmetry_hbond_refined 0.168 r_nbd_other 0.165 r_nbtor_other 0.085 r_chiral_restr 0.08 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1024 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing