1O51

Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.50 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.62932M ammonium sulfate, 0.1M tri-sodium citrate dihydrate pH 5.6, 0.2M potassium sodium tartrate tetrahydrate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 5.60
Crystal Properties
Matthews coefficientSolvent content
3.867.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.11α = 90
b = 100.11β = 90
c = 100.11γ = 90
Symmetry
Space GroupP 43 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAPS-1WATER COOLED FOCUSING 2ND CRYSTAL, ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR2002-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97914, 0.97934APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5501000.10970.0543.83635951.99
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.591000.58810.640.57

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.544.7755447871000.190.1840.229RANDOM35.09
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.257
r_dihedral_angle_4_deg25.487
r_dihedral_angle_3_deg17.152
r_dihedral_angle_1_deg6.913
r_scangle_it4.231
r_scbond_it2.586
r_angle_refined_deg1.784
r_mcangle_it1.685
r_angle_other_deg0.873
r_mcbond_it0.858
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.257
r_dihedral_angle_4_deg25.487
r_dihedral_angle_3_deg17.152
r_dihedral_angle_1_deg6.913
r_scangle_it4.231
r_scbond_it2.586
r_angle_refined_deg1.784
r_mcangle_it1.685
r_angle_other_deg0.873
r_mcbond_it0.858
r_nbd_refined0.241
r_symmetry_vdw_other0.222
r_xyhbond_nbd_refined0.2
r_nbd_other0.19
r_symmetry_vdw_refined0.178
r_symmetry_hbond_refined0.171
r_chiral_restr0.092
r_nbtor_other0.091
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms703
Nucleic Acid Atoms
Solvent Atoms39
Heterogen Atoms37

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
RESOLVEmodel building
SOLVEphasing
REFMACrefinement
RESOLVEphasing