1O4S

Crystal structure of Aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12932.4 (NH4)2SO4 9 CHES , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3146.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.048α = 90
b = 79.509β = 90
c = 170.184γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-04-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-CAPS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.943.0385.80.06315.94.85951036.89
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9250.60.4221.71.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMRTHROUGHOUT1BKG1.94358261124985.80.160.1590.2RANDOM31.06
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.15-0.19-1.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.445
r_dihedral_angle_3_deg15.962
r_dihedral_angle_4_deg14.915
r_dihedral_angle_1_deg6.147
r_scangle_it4.237
r_scbond_it2.473
r_angle_refined_deg1.623
r_mcangle_it1.459
r_angle_other_deg1.2
r_mcbond_it0.749
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.445
r_dihedral_angle_3_deg15.962
r_dihedral_angle_4_deg14.915
r_dihedral_angle_1_deg6.147
r_scangle_it4.237
r_scbond_it2.473
r_angle_refined_deg1.623
r_mcangle_it1.459
r_angle_other_deg1.2
r_mcbond_it0.749
r_symmetry_vdw_other0.366
r_symmetry_hbond_refined0.312
r_nbd_other0.239
r_symmetry_vdw_refined0.221
r_xyhbond_nbd_refined0.216
r_nbd_refined0.21
r_chiral_restr0.093
r_nbtor_other0.086
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5995
Nucleic Acid Atoms
Solvent Atoms587
Heterogen Atoms75

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement
CCP4data scaling