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Crystal structure of an hepn domain protein (tm0613) from thermotoga maritima at 1.75 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 293 10% PEG 8000; Imidazole pH 8.0; 0.2 M Ca(Ac)2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 8.00
Crystal Properties Matthews coefficient Solvent content 1.74 28.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.922 α = 90 b = 57.922 β = 90 c = 63.735 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2002-12-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97910, 0.97930, 0.91840 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 25.904 95.6 0.076 16.5 5.1 10935 27.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 72.3 0.417 2.2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 25.9 9855 1079 95.5 0.185 0.179 0.189 0.237 0.2437 RANDOM 16.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.44 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37 r_dihedral_angle_4_deg 19.45 r_dihedral_angle_3_deg 13.712 r_scangle_it 5.162 r_dihedral_angle_1_deg 4.846 r_scbond_it 3.051 r_mcangle_it 1.813 r_angle_refined_deg 1.255 r_mcbond_it 0.936 r_angle_other_deg 0.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37 r_dihedral_angle_4_deg 19.45 r_dihedral_angle_3_deg 13.712 r_scangle_it 5.162 r_dihedral_angle_1_deg 4.846 r_scbond_it 3.051 r_mcangle_it 1.813 r_angle_refined_deg 1.255 r_mcbond_it 0.936 r_angle_other_deg 0.787 r_symmetry_vdw_other 0.308 r_nbd_other 0.235 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.194 r_symmetry_vdw_refined 0.166 r_symmetry_hbond_refined 0.149 r_nbtor_other 0.086 r_chiral_restr 0.076 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 963 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling RESOLVE model building SOLVE phasing REFMAC refinement CCP4 data scaling RESOLVE phasing