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Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 293 25.5 % PEG 4000; 0.085 M Tris pH 8.5; 0.17 M Na(Ac), 15 % Glycerol, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.32 46.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.41 α = 90 b = 58.41 β = 90 c = 102.49 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 2002-10-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97780, 0.91840, 0.97920 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 32.159 99 0.061 28.1 11.8 12462 36.49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 90.9 0.375 3.2 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.49 11574 887 99 0.186 0.182 0.1914 0.238 0.2425 RANDOM 23.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.914 r_dihedral_angle_3_deg 15.381 r_dihedral_angle_4_deg 10.177 r_scangle_it 9.514 r_scbond_it 6.342 r_dihedral_angle_1_deg 6.319 r_mcangle_it 3.707 r_mcbond_it 2 r_angle_refined_deg 1.444 r_angle_other_deg 0.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.914 r_dihedral_angle_3_deg 15.381 r_dihedral_angle_4_deg 10.177 r_scangle_it 9.514 r_scbond_it 6.342 r_dihedral_angle_1_deg 6.319 r_mcangle_it 3.707 r_mcbond_it 2 r_angle_refined_deg 1.444 r_angle_other_deg 0.825 r_symmetry_vdw_other 0.3 r_nbd_other 0.243 r_xyhbond_nbd_refined 0.237 r_nbd_refined 0.193 r_symmetry_hbond_refined 0.184 r_symmetry_vdw_refined 0.14 r_chiral_restr 0.098 r_nbtor_other 0.081 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1223 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling RESOLVE model building SOLVE phasing CNS refinement XFIT data reduction MOSFLM data reduction CCP4 data scaling RESOLVE phasing