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Cyanomet hemoglobin (A-GLY-C:V1M,L29F,H58Q; B,D:V1M,L106W)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HHO PDB ENTRY 1HHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.7 pH 6.70
Crystal Properties Matthews coefficient Solvent content 1.99 38.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.671 α = 90 b = 56.671 β = 90 c = 185.834 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE RIGAKU RAXIS IIC COLLIMATOR 1998-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 97.6 0.053 22.5 3.27 13935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.5 97.1 0.237 5.45 3.27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HHO 2.3 8 13580 13580 1358 98 0.181 0.174 0.1689 0.267 0.1771 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2399
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.057 s_non_zero_chiral_vol 0.029 s_zero_chiral_vol 0.025 s_angle_d 0.013 s_bond_d 0.005 s_similar_dist 0.003 s_from_restr_planes s_rigid_bond_adp_cmpnt s_similar_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2202 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 90
Software Software Software Name Purpose SHELXL-97 refinement XSCALE data scaling CNS refinement XDS data scaling XDS data reduction CNS phasing