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Crystal structure of Ribonuclease III (TM1102) from Thermotoga maritima at 2.0 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.9 293 0.2 M Potassium Nitrate, 20% PEG 3350, pH 6.9, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 6.90
Crystal Properties Matthews coefficient Solvent content 2.23 44.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36 α = 67.2 b = 58.5 β = 92 c = 70.2 γ = 77.7
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-03-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979321, 0.978964, 0.918370 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.995 34.899 93.7 0.068 11.6 3.9 32670 -3 29.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.1 88.4 0.27 3.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 25 32670 32670 1631 94.6 0.195 0.195 0.1829 0.23 0.2281 RANDOM 25.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.522 0.539 5.397 1.771 1.869 0.751
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.972 c_scbond_it 2.652 c_mcangle_it 2.192 c_mcbond_it 1.483 c_angle_deg 1.38 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.972 c_scbond_it 2.652 c_mcangle_it 2.192 c_mcbond_it 1.483 c_angle_deg 1.38 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3851 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection MOSFLM data reduction SCALA data scaling CCP4 data reduction SnB phasing MLPHARE phasing CCP4 model building SOLVE phasing CNS refinement CCP4 data scaling