1O07

Crystal Structure of the complex between Q120L/Y150E mutant of AmpC and a beta-lactam inhibitor (MXG)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.7295Potassium Phosphate buffer, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.5251.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 118.808α = 90
b = 76.298β = 116.21
c = 98.127γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMirrors2000-08-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 5ID-B1.00000APS5ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.712598.10.04132.75.38327383273-328.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.711.77970.12210.73.68238

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTIsotropic with individual B factors refined1.7124.7776559405298.10.155520.153660.19105RANDOM12.264
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.460.87-0.61-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.112
r_scangle_it4.785
r_angle_other_deg4.079
r_scbond_it3.079
r_angle_refined_deg2.09
r_mcangle_it1.911
r_mcbond_it1.168
r_nbd_other0.223
r_symmetry_vdw_other0.22
r_nbd_refined0.161
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.112
r_scangle_it4.785
r_angle_other_deg4.079
r_scbond_it3.079
r_angle_refined_deg2.09
r_mcangle_it1.911
r_mcbond_it1.168
r_nbd_other0.223
r_symmetry_vdw_other0.22
r_nbd_refined0.161
r_symmetry_hbond_refined0.158
r_symmetry_vdw_refined0.148
r_xyhbond_nbd_refined0.137
r_chiral_restr0.127
r_nbtor_other0.113
r_bond_refined_d0.017
r_gen_planes_refined0.013
r_gen_planes_other0.013
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5572
Nucleic Acid Atoms
Solvent Atoms806
Heterogen Atoms82

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing