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The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.4 298 0.1 M Tris, 4 mM NiCl2,40% PEG 2000, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.66 25.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.586 α = 90 b = 47.895 β = 99.02 c = 72.417 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 4 Diamond M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.88 95.7 0.098 0.083 5.2 3.5 43875 43352 1.151 1.8 24.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 79.8 0.366 0.292 1.8 2.7 5230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 29.88 43352 41144 2190 95.45 0.175 0.17486 0.17257 0.2089 0.21679 0.2465 RANDOM 18.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 -0.09 -0.88 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.625 r_scangle_it 3.68 r_sphericity_free 3.516 r_scbond_it 2.688 r_sphericity_bonded 2.309 r_mcangle_it 2.043 r_angle_refined_deg 1.822 r_rigid_bond_restr 1.627 r_mcbond_it 1.593 r_angle_other_deg 0.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.625 r_scangle_it 3.68 r_sphericity_free 3.516 r_scbond_it 2.688 r_sphericity_bonded 2.309 r_mcangle_it 2.043 r_angle_refined_deg 1.822 r_rigid_bond_restr 1.627 r_mcbond_it 1.593 r_angle_other_deg 0.979 r_nbd_other 0.259 r_symmetry_vdw_other 0.244 r_symmetry_hbond_refined 0.229 r_xyhbond_nbd_refined 0.206 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.17 r_chiral_restr 0.117 r_nbtor_other 0.089 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3145 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 72
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement CCP4 data scaling