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The high resolution structures of RmlC from Streptococcus suis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 25% PEG 2000, 0.2 M MgCl2, 0.1 M Tris , 4 mM NiCl2, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.7 27.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.671 α = 90 b = 81.624 β = 108.8 c = 52.098 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2001-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 28.3 95.2 0.042 0.039 11.7 5.9 84137 3.64 3.1 14.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.33 84.1 0.213 0.241 3.1 2.8 4517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 49.39 3.678 88637 79880 4225 94.89 0.14465 0.14313 0.17428 0.2601 RANDOM 9.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.23 -0.12 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.702 r_scangle_it 3.977 r_scbond_it 2.706 r_mcangle_it 1.875 r_angle_refined_deg 1.481 r_mcbond_it 1.265 r_angle_other_deg 0.836 r_symmetry_vdw_other 0.335 r_nbd_other 0.259 r_symmetry_vdw_refined 0.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.702 r_scangle_it 3.977 r_scbond_it 2.706 r_mcangle_it 1.875 r_angle_refined_deg 1.481 r_mcbond_it 1.265 r_angle_other_deg 0.836 r_symmetry_vdw_other 0.335 r_nbd_other 0.259 r_symmetry_vdw_refined 0.232 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.091 r_nbtor_other 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3230 Nucleic Acid Atoms Solvent Atoms 633 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MLPHARE phasing REFMAC refinement CCP4 data scaling