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Structure of carbapenem synthase (CarC) complexed with N-acetyl proline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NX4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 292 PEG 8000, ammonium acetate, isopropanol, Tris, iron sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.72 54.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.443 α = 90 b = 164.082 β = 90 c = 146.33 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2002-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.9780 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 24.885 97 0.064 7.5 157442 41629 42.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 98.6 0.235 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NX4 2.3 81.65 41629 39546 2082 95.99 0.22991 0.22991 0.22751 0.2277 0.2751 0.274 RANDOM 22.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.78 0.49 -2.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.968 r_dihedral_angle_1_deg 4.81 r_scangle_it 2.614 r_angle_refined_deg 1.73 r_scbond_it 1.686 r_mcangle_it 0.988 r_mcbond_it 0.556 r_metal_ion_refined 0.205 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.139
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.968 r_dihedral_angle_1_deg 4.81 r_scangle_it 2.614 r_angle_refined_deg 1.73 r_scbond_it 1.686 r_mcangle_it 0.988 r_mcbond_it 0.556 r_metal_ion_refined 0.205 r_symmetry_hbond_refined 0.147 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.12 r_nbd_refined 0.115 r_symmetry_vdw_refined 0.114 r_bond_refined_d 0.014 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6063 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing