☰ Navigation Tabs
N5-glutamine methyltransferase, HemK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 PEG 3000, NaCitrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 100K
Crystal Properties Matthews coefficient Solvent content 2.66 53.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.489 α = 90 b = 59.062 β = 109.22 c = 85.605 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.033 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 94.7 0.05 26 5 32326 32326 46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 66.5 0.351 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 29.75 32346 30679 1646 94.71 0.18958 0.18958 0.18622 0.1962 0.2526 RANDOM 38.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.1 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.645 r_scangle_it 5.506 r_scbond_it 3.463 r_mcangle_it 2.435 r_angle_refined_deg 2.412 r_mcbond_it 1.339 r_angle_other_deg 1.224 r_symmetry_hbond_refined 0.403 r_symmetry_vdw_refined 0.279 r_symmetry_vdw_other 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.645 r_scangle_it 5.506 r_scbond_it 3.463 r_mcangle_it 2.435 r_angle_refined_deg 2.412 r_mcbond_it 1.339 r_angle_other_deg 1.224 r_symmetry_hbond_refined 0.403 r_symmetry_vdw_refined 0.279 r_symmetry_vdw_other 0.266 r_nbd_other 0.256 r_xyhbond_nbd_refined 0.236 r_nbd_refined 0.232 r_chiral_restr 0.15 r_nbtor_other 0.103 r_bond_refined_d 0.03 r_gen_planes_refined 0.011 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4296 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection SCALEPACK data scaling SOLVE phasing