☰ Navigation Tabs
The Sanglifehrin-Cyclophilin Interaction: Degradation Work, Synthetic Macrocyclic Analogues, X-ray Crystal Structure and Binding Data
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CWA PDB ENTRY 1CWA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 PEG 6000, tris-HCl, NaCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.92 35.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.2 α = 90 b = 67.3 β = 90 c = 78.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MACSCIENCE 1997-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 99.3 0.088 15.9 5.4 18318 18318 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.9 0.403 4.1 5.3 1808
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CWA 2.1 15 18282 17342 940 99.07 0.1645 0.16453 0.1632 0.1733 0.18891 0.1973 RANDOM 20.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.44 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.732 r_dihedral_angle_1_deg 4.07 r_scangle_it 4.02 r_scbond_it 2.407 r_mcangle_it 1.651 r_angle_refined_deg 1.406 r_mcbond_it 0.849 r_angle_other_deg 0.743 r_symmetry_vdw_other 0.224 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.732 r_dihedral_angle_1_deg 4.07 r_scangle_it 4.02 r_scbond_it 2.407 r_mcangle_it 1.651 r_angle_refined_deg 1.406 r_mcbond_it 0.849 r_angle_other_deg 0.743 r_symmetry_vdw_other 0.224 r_nbd_refined 0.21 r_nbd_other 0.21 r_symmetry_hbond_refined 0.185 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.091 r_xyhbond_nbd_other 0.029 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2532 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing