1NM5

R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROPVAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
2.6753.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.939α = 90
b = 73.886β = 90
c = 205.257γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-03-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43095.30.0617.82.94292957
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5393.40.5511.72.75828

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONisomorphous replacementTHROUGHOUTPDB ENTRY 1HZZ2.410041317199190.940.237650.236350.26376RANDOM43.246
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.973.22-6.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.891
r_scangle_it1.934
r_angle_refined_deg1.325
r_scbond_it1.136
r_mcangle_it0.976
r_angle_other_deg0.891
r_mcbond_it0.535
r_nbd_other0.212
r_symmetry_vdw_refined0.203
r_nbd_refined0.186
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.891
r_scangle_it1.934
r_angle_refined_deg1.325
r_scbond_it1.136
r_mcangle_it0.976
r_angle_other_deg0.891
r_mcbond_it0.535
r_nbd_other0.212
r_symmetry_vdw_refined0.203
r_nbd_refined0.186
r_xyhbond_nbd_refined0.156
r_symmetry_vdw_other0.141
r_nbtor_other0.085
r_chiral_restr0.07
r_symmetry_hbond_refined0.036
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6593
Nucleic Acid Atoms
Solvent Atoms67
Heterogen Atoms125

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling