☰ Navigation Tabs
R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HZZ PDB ENTRY 1HZZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.67 53.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.939 α = 90 b = 73.886 β = 90 c = 205.257 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 95.3 0.06 17.8 2.9 42929 57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 93.4 0.551 1.7 2.7 5828
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION isomorphous replacement THROUGHOUT PDB ENTRY 1HZZ 2.4 100 41317 1991 90.94 0.23765 0.23635 0.26376 RANDOM 43.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.97 3.22 -6.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.891 r_scangle_it 1.934 r_angle_refined_deg 1.325 r_scbond_it 1.136 r_mcangle_it 0.976 r_angle_other_deg 0.891 r_mcbond_it 0.535 r_nbd_other 0.212 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.891 r_scangle_it 1.934 r_angle_refined_deg 1.325 r_scbond_it 1.136 r_mcangle_it 0.976 r_angle_other_deg 0.891 r_mcbond_it 0.535 r_nbd_other 0.212 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.186 r_xyhbond_nbd_refined 0.156 r_symmetry_vdw_other 0.141 r_nbtor_other 0.085 r_chiral_restr 0.07 r_symmetry_hbond_refined 0.036 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6593 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 125
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling